Search and clustering orders of magnitude faster than BLAST
- PMID: 20709691
- DOI: 10.1093/bioinformatics/btq461
VSports注册入口 - Search and clustering orders of magnitude faster than BLAST
Abstract (V体育官网入口)
Motivation: Biological sequence data is accumulating rapidly, motivating the development of improved high-throughput methods for sequence classification. VSports手机版.
Results: UBLAST and USEARCH are new algorithms enabling sensitive local and global search of large sequence databases at exceptionally high speeds. They are often orders of magnitude faster than BLAST in practical applications, though sensitivity to distant protein relationships is lower. UCLUST is a new clustering method that exploits USEARCH to assign sequences to clusters V体育安卓版. UCLUST offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets. .
Availability: Binaries are available at no charge for non-commercial use at http://www. drive5. com/usearch. V体育ios版.
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