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Meta-Analysis
. 2016 Jun;15(7):695-707.
doi: 10.1016/S1474-4422(16)00102-2. Epub 2016 Apr 7.

Identification of additional risk loci for stroke and small vessel disease: a meta-analysis of genome-wide association studies

Collaborators
Meta-Analysis

Identification of additional risk loci for stroke and small vessel disease: a meta-analysis of genome-wide association studies (V体育安卓版)

Neurology Working Group of the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium, the Stroke Genetics Network (SiGN), and the International Stroke Genetics Consortium (ISGC). Lancet Neurol. 2016 Jun.

Abstract

Background: Genetic determinants of stroke, the leading neurological cause of death and disability, are poorly understood and have seldom been explored in the general population. Our aim was to identify additional loci for stroke by doing a meta-analysis of genome-wide association studies VSports手机版. .

Methods: For the discovery sample, we did a genome-wide analysis of common genetic variants associated with incident stroke risk in 18 population-based cohorts comprising 84 961 participants, of whom 4348 had stroke. Stroke diagnosis was ascertained and validated by the study investigators. Mean age at stroke ranged from 45·8 years to 76·4 years, and data collection in the studies took place between 1948 and 2013. We did validation analyses for variants yielding a significant association (at p<5 × 10(-6)) with all-stroke, ischaemic stroke, cardioembolic ischaemic stroke, or non-cardioembolic ischaemic stroke in the largest available cross-sectional studies (70 804 participants, of whom 19 816 had stroke) V体育安卓版. Summary-level results of discovery and follow-up stages were combined using inverse-variance weighted fixed-effects meta-analysis, and in-silico lookups were done in stroke subtypes. For genome-wide significant findings (at p<5 × 10(-8)), we explored associations with additional cerebrovascular phenotypes and did functional experiments using conditional (inducible) deletion of the probable causal gene in mice. We also studied the expression of orthologs of this probable causal gene and its effects on cerebral vasculature in zebrafish mutants. .

Findings: We replicated seven of eight known loci associated with risk for ischaemic stroke, and identified a novel locus at chromosome 6p25 (rs12204590, near FOXF2) associated with risk of all-stroke (odds ratio [OR] 1·08, 95% CI 1·05-1·12, p=1·48 × 10(-8); minor allele frequency 21%). The rs12204590 stroke risk allele was also associated with increased MRI-defined burden of white matter hyperintensity-a marker of cerebral small vessel disease-in stroke-free adults (n=21 079; p=0·0025) V体育ios版. Consistently, young patients (aged 2-32 years) with segmental deletions of FOXF2 showed an extensive burden of white matter hyperintensity. Deletion of Foxf2 in adult mice resulted in cerebral infarction, reactive gliosis, and microhaemorrhage. The orthologs of FOXF2 in zebrafish (foxf2b and foxf2a) are expressed in brain pericytes and mutant foxf2b(-/-) cerebral vessels show decreased smooth muscle cell and pericyte coverage. .

Interpretation: We identified common variants near FOXF2 that are associated with increased stroke susceptibility. Epidemiological and experimental data suggest that FOXF2 mediates this association, potentially via differentiation defects of cerebral vascular mural cells VSports最新版本. Further expression studies in appropriate human tissues, and further functional experiments with long follow-up periods are needed to fully understand the underlying mechanisms. .

Funding: NIH, NINDS, NHMRC, CIHR, European national research institutions, Fondation Leducq V体育平台登录. .

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Conflict of interest statement

Declaration of interests

We declare no competing interests.

Figures

Figure 1
Figure 1. Regional association plot of rs12204590 in discovery stage
Association of rs12204590 and other genotyped or imputed SNPs (circles) in the region with incident all-stroke. Colour variation shows linkage disequilibrium between SNPs (r2) as calculated in 1000 Genomes Project (phase 1, version 3). Blue lines show estimated recombination rates. Coloured tracksseen at bottom of figure were added using the University of California, Santa Cruz genome browser and the RegulomeDB database. SNP track=SNPs encompassing the selected region and red dashed line shows position of top SNP (rs12204590). Regulome track=RegulomeDB scores and variants with lower scores have higher probability of acting as regulatory variants. DNase track=DNase hypersensitive regions assayed in 125 cell types (ENCODE project, Release 3,2014). TFbs track=regions where transcription factors, proteins responsible for modulating gene transcription, bind to DNA as assayed by ChIP-seq assay (ENCODE project, Release 3, 2013).
Figure 2
Figure 2. Cerebrovascular phenotype of FOXF2 and FOXC1 deletions in humans and FoxF2 knockout mice, and expression of foxf2a and foxf2b in zebrafish
(A–D) In two patients with segmental deletion encompassing FOXC1, white matter hyperintensities are noted in periventricular region (A,B) and subcortical regions (B). In two patients with segmental deletion of both FOXC1 and FOXF2 (C,D), mean white matter hyperintensities volume is increased by more than ten times (E), in subcortical and periventricular regions (see appendix p 68 for white matter hyperintensities volumes in each of the four patients). (F–I) Cerebral cortex of conditional Foxf2 knockout mouse showing ischaemic infarction and haemorrhagic tissue. (F) Area with condensed eosinophilic cytoplasm and pyknotic nuclei (to the right dashed line) that indicates recent ischaemic infarction. (Fi) Normal tissue and (Fii) tissue with ischaemic infarction at higher magnification. (G) Glial fibrillary acidic protein immunofluorescence of area with reactive astrogliosis in cerebral cortex of Foxf2 conditional knockout mouse. (H) Cerebral cortex from control mouse showing normal neuronal tissue and intact capillaries. (I) Haemorrhagic area of cerebral cortex from Foxf2 conditional knockout mouse. Extravascular erythrocytes seen both as intact cells (homogeneous greenish blue) and lysed cells (black). (J–M) RNA in situ hybridisation (purple) of larval zebrafish brains shows expression of foxf2a (J) and foxf2b (K) in presumptive pericytes compared with known pericyte markers pdgfrβ (L) and notch3 (M; purple) around capillaries in 1-month old larval zebrafish (brown). (N-Q) foxf2/ mutants have reduced expression of pericyte marker pdgfrβ in 4-day postfertilisation embryonic cerebral vasculature. (R–U) Loss of foxf2b results in reduction of the smooth-muscle marker acta2:GFP coverage of blood vessels in wild type (n=11), foxf2+/ (n=31), and Foxf2−/− (n=20) embryonic cerebral vasculature. (R–T) Examples of high, medium, and low branch order coverage scored from 0 to the 4th order branch in vessel coverage presented as percentages of total embryo counts (U). Arrow heads in images J–Q refer to positions showing pericytes.

V体育ios版 - Comment in

  • A stroke of insight from genetics.
    Visscher PM, Veldink JH. Visscher PM, et al. Lancet Neurol. 2016 Jun;15(7):653-654. doi: 10.1016/S1474-4422(16)30028-X. Epub 2016 Apr 7. Lancet Neurol. 2016. PMID: 27068587 No abstract available.

VSports - References

    1. Johnston SC, Mendis S, Mathers CD. Global variation in stroke burden and mortality: estimates from monitoring, surveillance, and modelling. Lancet Neurol. 2009;8:345–54. - PubMed
    1. Falcone GJ, Malik R, Dichgans M, Rosand J. Current concepts and clinical applications of stroke genetics. Lancet Neurol. 2014;13:405–18. - PubMed
    1. Bevan S, Traylor M, Adib-Samii P, et al. Genetic heritability of ischemic stroke and the contribution of previously reported candidate gene and genomewide associations. Stroke. 2012;43:3161–67. - PubMed
    1. Manolio TA. Bringing genome-wide association findings into clinical use. Nat Rev Genet. 2013;14:549–58. - PubMed (V体育安卓版)
    1. Ikram MA, Seshadri S, Bis JC, et al. Genomewide association studies of stroke. N Engl J Med. 2009;360:1718–28. - PMC - PubMed

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