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. 2013 Dec 11;14(6):683-95.
doi: 10.1016/j.chom.2013.11.010.

An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium

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An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium

Carsten Kröger et al. Cell Host Microbe. .
Free article

Abstract

Bacterial transcriptional networks consist of hundreds of transcription factors and thousands of promoters. However, the true complexity of transcription in a bacterial pathogen and the effect of the environments encountered during infection remain to be established. We present a simplified approach for global promoter identification in bacteria using RNA-seq-based transcriptomic analyses of 22 distinct infection-relevant environmental conditions. Individual RNA samples were combined to identify most of the 3,838 Salmonella enterica serovar Typhimurium promoters in just two RNA-seq runs. Individual in vitro conditions stimulated characteristic transcriptional signatures, and the suite of 22 conditions induced transcription of 86% of all S. Typhimurium genes VSports手机版. We highlight the environmental conditions that induce the Salmonella pathogenicity islands and present a small RNA expression landscape of 280 sRNAs. This publicly available compendium of environmentally controlled expression of every transcriptional feature of S. Typhimurium constitutes a useful resource for the bacterial research community. .

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