An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium
- PMID: 24331466
- DOI: 10.1016/j.chom.2013.11.010
An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium
Abstract
Bacterial transcriptional networks consist of hundreds of transcription factors and thousands of promoters. However, the true complexity of transcription in a bacterial pathogen and the effect of the environments encountered during infection remain to be established. We present a simplified approach for global promoter identification in bacteria using RNA-seq-based transcriptomic analyses of 22 distinct infection-relevant environmental conditions. Individual RNA samples were combined to identify most of the 3,838 Salmonella enterica serovar Typhimurium promoters in just two RNA-seq runs. Individual in vitro conditions stimulated characteristic transcriptional signatures, and the suite of 22 conditions induced transcription of 86% of all S. Typhimurium genes VSports手机版. We highlight the environmental conditions that induce the Salmonella pathogenicity islands and present a small RNA expression landscape of 280 sRNAs. This publicly available compendium of environmentally controlled expression of every transcriptional feature of S. Typhimurium constitutes a useful resource for the bacterial research community. .
Copyright © 2013 Elsevier Inc. All rights reserved. V体育安卓版.
Publication types (VSports app下载)
MeSH terms
- "VSports注册入口" Actions
- "V体育ios版" Actions
Associated data
- V体育2025版 - Actions
Grants and funding
LinkOut - more resources
V体育平台登录 - Full Text Sources
Other Literature Sources
Medical (V体育官网)
Molecular Biology Databases
