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. 2010 Jun 15;49(23):4852-63.
doi: 10.1021/bi100363t.

Substrate specificity and kinetic studies of PADs 1, 3, and 4 identify potent and selective inhibitors of protein arginine deiminase 3

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Substrate specificity and kinetic studies of PADs 1, 3, and 4 identify potent and selective inhibitors of protein arginine deiminase 3 (VSports手机版)

V体育平台登录 - Bryan Knuckley et al. Biochemistry. .

Abstract

Protein citrullination has been shown to regulate numerous physiological pathways (e. g. , the innate immune response and gene transcription) and is, when dysregulated, known to be associated with numerous human diseases, including cancer, rheumatoid arthritis, and multiple sclerosis. This modification, also termed deimination, is catalyzed by a group of enzymes called the protein arginine deiminases (PADs). In mammals, there are five PAD family members (i. e. , PADs 1, 2, 3, 4, and 6) that exhibit tissue-specific expression patterns and vary in their subcellular localization. The kinetic characterization of PAD4 was recently reported, and these efforts guided the development of the two most potent PAD4 inhibitors (i. e. , F- and Cl-amidine) known to date VSports手机版. In addition to being potent PAD4 inhibitors, we show here that Cl-amidine also exhibits a strong inhibitory effect against PADs 1 and 3, thus indicating its utility as a pan PAD inhibitor. Given the increasing number of diseases in which dysregulated PAD activity has been implicated, the development of PAD-selective inhibitors is of paramount importance. To aid that goal, we characterized the catalytic mechanism and substrate specificity of PADs 1 and 3. Herein, we report the results of these studies, which suggest that, like PAD4, PADs 1 and 3 employ a reverse protonation mechanism. Additionally, the substrate specificity studies provided critical information that aided the identification of PAD3-selective inhibitors. These compounds, denoted F4- and Cl4-amidine, are the most potent PAD3 inhibitors ever described. .

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Figures

Figure 1
Figure 1
(A) PADs catalyze the posttranslational conversion of peptidylarginine to peptidylcitrulline. (B) Structures of PAD inhibitors including, F- and Cl-amidine, F4- and Cl4-amidine, and F- and Cl-ethyl-amidine. (C) Proposed mechanism of PAD inactivation.
Figure 2
Figure 2
Plot of log kcat/Km versus pH for (A) PAD1 and (B) PAD3. (C) Plot of log kcat versus pH for PAD1.
Figure 3
Figure 3
Time and concentration dependent inactivation of PAD1 by iodoacetamide. (A) Inactivation of PAD1 at pH 7.6 at various concentrations of iodoacetamide: (×) 0 μM (•) 50 μM (■) 100 μM (▲) 250 μM. (B) Plot of the pseudo-first order rate constants of inactivation, i.e. kobs, versus iodoacetamide concentration for PAD1 inactivation. (C) Plot of the second order rate constants of inactivation, i.e. kinact/KI, versus pH to identify the pKa of the active site cysteine. (D) Substrate protection experiments with PAD1 demonstrate the substrate can protect against the iodoacetamide-induced inactivation of PAD1.
Figure 4
Figure 4
Time and concentration dependent inactivation of PAD1 by 2-chloroacetamidine. (A) The inactivation of PAD1 at pH 7.6 for various concentrations of 2-chloroacetamide: (×) 0 μM (•) 500 μM (■) 1000 μM (▲) 3000 μM. (B) Plot of the pseudo-first order rate constants of inactivation, i.e. kobs, versus 2-chloroacetamidine concentration for PAD1 inactivation. (C) Plot of the second order rate constants of inactivation, i.e. kinact/KI, versus pH to identify the pKa of the active site cysteine. (D) Substrate protection experiments with PAD1 demonstrate substrate can protect against the 2-chloroacetamidine-induced inactivation of PAD1.
Figure 5
Figure 5
Plots of the kcat/Km data shown in Table 4 were generated to provide a visual depiction of the results of the substrate specificity studies on histone H4 tail mimics. Comparisons of the data to show (A) major site of deimination as determined by Arg substitution, (B) the effects of peptide length on substrate recognition, (C and D) the effects of site directed ‘mutagenesis’ experiments.
Figure 6
Figure 6
(A) Inhibition of PADs 1, 3, and 4 by (A) F- and Cl-amidine (top), F- and Cl-ethylamidine (middle), and F4- and Cl4-amidine (bottom). (B) Plot of kobs versus the concentration of F-amidine (top) and Cl-amidine (bottom) for the inactivation of PAD3.
Scheme 1
Scheme 1
Binding of a positively charged or neutral inactivator (I) to either the E-SH (thiol-form of the enzyme) or E-S (thiolate) form of the enzyme.

References

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